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LAB_STATUS: PhD Student • Active Lab Research

About Me

I am a PhD student trained in Biotechnology Engineering and Biological Sciences, with a particular interest in plant science and somatic embryogenesis. My research experience has allowed me to approach biological questions from both experimental and computational perspectives. Beyond my research, I am interested in science communication, bioinformatics, and programming in R and Python, as well as contributing to the development and visibility of plant science in Mexico. I am especially interested in finding clear ways to connect biological questions, data, and scientific communication.

Outside of research, I share my life with my cat, Haruki, and my dog, Zizek. They are an important part of my everyday life and bring a welcome balance to the academic side of things.

Brigitte Valeria - PhD Student in Biological Sciences
Brigitte V. Vargas-Morales
M.Sc. in Biological Sciences

Research Interest

No research interests yet

Research interests will appear here when they are added.

Toolkit

Wet Lab // Molecular Biology

BENCH_WORK

// Molecular Assays & Nucleic Acids

  • DNA & RNA Isolation
  • PCR Amplification
  • RT-qPCR / Quantitative Expression Analysis
  • Agarose Gel Electrophoresis

// Molecular Cloning & Transformation

  • Vector Cloning
  • Restriction Digestion & Ligation
  • Bacterial Transformation
  • Plant Transformation

// Cell & Tissue Culture

  • Establishment & Maintenance of Plant Tissue Cultures
  • Establishment & Maintenance of Mammalian Cell Cultures

// Microscopy & Plant Physiology

  • Optical Microscopy
  • Confocal Laser Scanning Microscopy (CLSM)

Dry Lab // Computational & Bioinformatics

Data pipelines, high-throughput sequence analysis, and reproducible computational workflows.

IN_SILICO

// Bioinformatics & Sequence Analysis

  • RNA-seq Pipeline (FastQC, fastp, HISAT2, HTSeq-count, featureCounts, DESeq2)
  • Differential Expression & Gene Ontology (GO)
  • sgRNA Off-Target Prediction & CRISPR Design

// Programming & Scientific Computing

  • R / Bioconductor (ggplot2, tidyverse)
  • Python (Biopython, pandas)
  • Bash Scripting & Unix Environment

// HPC & Development Tools

  • Linux HPC Cluster
  • Git / Version Control & GitHub
  • Docker / Conda Environments

Education

// Degrees & Education

Ph.D. in Biological Sciences

In Progress
Centro de Investigación Científica de Yucatán (CICY) • Yucatan, Mexico

M.Sc. in Biological Sciences

Centro de Investigación Científica de Yucatán (CICY) • Yucatan, Mexico

B.Sc. in Biotechnology Engineering

Faculty of Chemical Engineering, Autonomous University of Yucatan (UADY) • Yucatan, Mexico